PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01182.1_g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 325aa    MW: 36050.9 Da    PI: 5.2182
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01182.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.1e-2077127155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              + ++GVr++  +g+WvAeIr+p   + r  r +lg+f tae+Aa+a+++a+k+++g
  Rsa1.0_01182.1_g00010.1  77 CSFRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFPTAEKAAAAYDEAAKAMYG 127
                              579****999.**********8...3.35************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.9E-1477127IPR001471AP2/ERF domain
CDDcd000181.86E-1777135No hitNo description
PROSITE profilePS5103221.91878135IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-3178137IPR001471AP2/ERF domain
SMARTSM003802.7E-3878141IPR001471AP2/ERF domain
PRINTSPR003677.9E-107990IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-2179137IPR016177DNA-binding domain
PRINTSPR003677.9E-10101117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAVYDHSGEI NRTEPDTSKK RKSRTRRDGT TVADRIKKWK EYNDTVEESP SKKRKVPAKG  60
SKKGCMKGKG GPENGRCSFR GVRQRTWGKW VAEIREPNRG SRLWLGTFPT AEKAAAAYDE  120
AAKAMYGPLA RVNFPQSSVS DVTSTSSRSE VCTAETPSVV HVKTEEGGCE SRPSFVENGV  180
HESAEEMKRD FKVDDPSKDW LREFEQGWWT GLLEEKQKQK EQEIVVGNSL KQPDSLSVSD  240
YGWPEDTNQN QWDAAEMFDV AELLGDLNGD IFTGANQNGL SEPGKLDIGL PPLPSIGSGY  300
GLPPPQHEAQ DGNGFFDLSF LDAKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-1679135360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12027RKSRTRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013606621.11e-150PREDICTED: dehydration-responsive element-binding protein 2A
SwissprotO821321e-137DRE2A_ARATH; Dehydration-responsive element-binding protein 2A
TrEMBLA0A0D3EHL81e-150A0A0D3EHL8_BRAOL; Uncharacterized protein
STRINGBra009112.1-P1e-142(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28741765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.11e-103DRE-binding protein 2A